Warning: no access to tty (Bad file descriptor).
Thus no job control in this shell.
cat SPECS/ExACT.spec.in | /usr/bin/perl bin/in2spec.pl > SPECS/ExACT.spec
echo 'spec=SPECS/ExACT; spec=${spec#SPECS/}; perl bin/resolve_deps.pl --verbose --spec $spec' | /bin/bash
+Calling parse_req on ExACT.

+Trying to yum install: ExACT


+Trying to build from spec: ExACT

make[1]: Entering directory `/usr/src/biopackages'
make[1]: `SPECS/ExACT.spec' is up to date.
make[1]: Leaving directory `/usr/src/biopackages'
+Calling parse_req on gcc-c++.

+Trying to yum install: gcc-c++

+Calling parse_req on swig.

+Trying to yum install: swig

+Calling parse_req on make.

+Trying to yum install: make

+Calling parse_req on biopackages.

+Trying to yum install: biopackages

+Calling parse_req on unzip.

+Trying to yum install: unzip


+make SPECS/ExACT.spec SPECS/ExACT.built

make[1]: Entering directory `/usr/src/biopackages'
make[1]: `SPECS/ExACT.spec' is up to date.
perl -e '($f,$e,$d,$c,$b,$a)=localtime();print "#rpmbuild begin ".join(":",$a+1900,$b,$c,$d,$e,$f),"\n"' > SPECS/ExACT.built
(/usr/bin/rpmbuild -ba SPECS/ExACT.spec 2>&1 >> SPECS/ExACT.built && \
perl -e '($f,$e,$d,$c,$b,$a)=localtime();print "#rpmbuild end ".join(":",$a+1900,$b,$c,$d,$e,$f),"\n"' >> SPECS/ExACT.built) || rm -rf SPECS/ExACT.built
+ umask 022
+ cd /usr/src/biopackages/BUILD
+ cd /usr/src/biopackages/BUILD
+ rm -rf exact-1.2.1-20060130-src
+ /usr/bin/unzip /usr/src/biopackages/SOURCES/exact-1.2.1-20060130-src.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd exact-1.2.1-20060130-src
++ /usr/bin/id -u
+ '[' 776 = 0 ']'
++ /usr/bin/id -u
+ '[' 776 = 0 ']'
+ /bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ mkdir -p /usr/src/biopackages/tmp/ExACT-1.2.1-1.3.bp.fc2-root-bpbuild//usr/bin
+ mkdir -p /usr/src/biopackages/tmp/ExACT-1.2.1-1.3.bp.fc2-root-bpbuild//usr/lib
+ mkdir -p /usr/src/biopackages/tmp/ExACT-1.2.1-1.3.bp.fc2-root-bpbuild//usr/include
+ mkdir -p /usr/src/biopackages/tmp/ExACT-1.2.1-1.3.bp.fc2-root-bpbuild//usr/lib/perl5/site_perl/5.8.3
+ exit 0
+ umask 022
+ cd /usr/src/biopackages/BUILD
+ cd exact-1.2.1-20060130-src
+ cd ./exact
+ cp /usr/src/biopackages/SOURCES/AB_Carray_wrap.c ./modules/Carray/
+ export EXACT_INSTALL_TOP=/usr/src/biopackages/tmp/ExACT-1.2.1-1.3.bp.fc2-root-bpbuild/usr
+ EXACT_INSTALL_TOP=/usr/src/biopackages/tmp/ExACT-1.2.1-1.3.bp.fc2-root-bpbuild/usr
+ export EXACT_INSTALL_SHARE=/usr/src/biopackages/tmp/ExACT-1.2.1-1.3.bp.fc2-root-bpbuild/usr
+ EXACT_INSTALL_SHARE=/usr/src/biopackages/tmp/ExACT-1.2.1-1.3.bp.fc2-root-bpbuild/usr
+ export EXACT_INSTALL_CCS=/usr/src/biopackages/tmp/ExACT-1.2.1-1.3.bp.fc2-root-bpbuild/usr
+ EXACT_INSTALL_CCS=/usr/src/biopackages/tmp/ExACT-1.2.1-1.3.bp.fc2-root-bpbuild/usr
+ bash ./set-env.sh
+ make
Makefile.inc:136: *** You must have SWIG 'SWIG Version 1.3.24' to build exact. Not 'SWIG Version 1.3.19'.  Stop.
error: Bad exit status from /usr/src/biopackages/tmp/rpm-tmp.49986 (%build)
    Bad exit status from /usr/src/biopackages/tmp/rpm-tmp.49986 (%build)
make[1]: Leaving directory `/usr/src/biopackages'

RESOLVE_DEPS: BUILD COMPLETE!


RESOLVE_DEPS: MISSING REQS:
+biopackages
+make
+gcc-c++
+unzip
+swig
+ExACT
sudo rpm -e m4-1.4.1-15 primer3-1.0.0-1.3.bp.fc2 apr-0.9.4-11 gdk-pixbuf-0.22.0-5.0.1 drupal-4.6.2-1.7.bp.fc2 php-4.3.4-11 libxslt-1.1.5-1 apr-devel-0.9.4-11 libjpeg-6b-31.1 perl-MLDBM-2.01-2.1.fc2.rf perl-Data-Stag-0.10-1.1.fc2.rf perl-WeakRef-0.01-1.1.bp.fc2 perl-XML-XPath-1.13-1.1.fc2.dag perl-WWW-Mechanize-1.20-1.fc2.rf libpng-devel-1.2.2-22 httpd-devel-2.0.51-2.9 perl-XML-Stream-1.22-1.1.fc2.rf esound-0.2.34-2 php-devel-4.3.4-11 perl-Cache-Cache-1.05-1.fc2.rf perl-rrdtool-1.2.15-1.fc2.rf perl-Parse-Yapp-1.05-31 mod_perl-devel-2.0.1-1.3.bp.fc2 db4-devel-4.2.52-3.1 SDL-devel-1.2.7-3 perl-Apache-Session-1.81-1.fc2.rf libungif-4.1.0-17.1 perl-Tree-DAG_Node-1.05-1.1.fc2.rf gpg-pubkey-e42d547b-3960bdf1 perl-XML-DOM-XPath-0.13-1.fc2.rf ant-1.5.2-26 libpng-1.2.2-22 ncbi-devel-2.2.8-1.3.bp.fc2 perl-GD-2.30-2.1.fc2.rf ncbi-2.2.8-1.3.bp.fc2 alsa-lib-devel-1.0.3a-2 perl-Class-Accessor-0.30-1.fc2.rf bison-1.875-7.1 postgresql-7.4.2-1 perl-XML-Filter-BufferText-1.01-1.1.fc2.rf xorg-x11-libs-data-6.7.0-2 edb-1.0.3-1.1.fc2.dag perl-Ace-1.89-1.2.bp.fc2 apt-0.5.15lorg3.2-1.fc2.rf perl-Apache-ParseFormData-0.09-1.6.bp.fc2 perl-Text-Iconv-1.4-1.1.fc2.rf php-pear-4.3.4-11 xorg-x11-font-utils-6.7.0-2 perl-Net-Jabber-2.0-1.1.fc2.rf genome-Sce-nib-S228C-1.6.bp.fc2 texinfo-4.6-3 fontconfig-devel-2.2.1-10 perl-IPC-ShareLite-0.09-2.1.fc2.rf perl-Authen-SASL-2.10-1.fc2.rf perl-XML-Parser-2.34-2 xorg-x11-xfs-6.7.0-2 libxml2-2.6.16-1.1.fc2.rf perl-Ima-DBI-0.34-1.1.fc2.rf qt-3.3.2-2 perl-Class-AutoClass-0.09-1.2.bp.fc2 esound-devel-0.2.34-2 perl-Clone-0.22-1.fc2.rf perl-XML-NamespaceSupport-1.09-1.1.fc2.rf cups-libs-1.1.20-6 gpg-pubkey-1aa78495-3eb24301 libstdc++-devel-3.3.3-7 faac-1.25-2.fc2.rf libtiff-devel-3.5.7-16.1 perl-XML-LibXSLT-1.62-1.fc2.rf gcc-3.3.3-7 perl-Digest-HMAC-1.01-12 tk-devel-8.4.5-8 perl-HTML-Parser-3.35-5 affyfile-2-1.10.bp.fc2 postgresql-server-7.4.2-1 genome-Hsa-17-1.1.bp.fc2 perl-Statistics-Descriptive-2.6-1.1.fc2.rf curl-7.11.1-1 tetex-2.0.2-13 perl-libxml-enno-1.02-30 perl-Tk-804.027-3.1.fc2.rf pango-1.4.0-2 perl-Net-XMPP-1.0-1.1.fc2.rf ttmkfdir-3.0.9-11 fftw3-devel-3.1.1-1.3.bp.fc2 readline-devel-4.3-10.1 perl-BSD-Resource-1.28-1.fc2.rf xalan-j-2.4.1-14 perl-libxml-perl-0.07-29 perl-Digest-SHA1-2.11-1.fc2.rf mysql-devel-3.23.58-9 tk-8.4.5-8 xorg-x11-Mesa-libGL-6.7.0-2 postgresql-devel-7.4.2-1 SDL-1.2.7-3 syslinux-3.20-1.fc2.rf libtool-libs-1.5.6-1 perl-XML-Encoding-1.01-25 expat-devel-1.95.7-1.1 perl-Compress-Zlib-1.42-1.fc2.rf perl-Class-DBI-0.96-1.4.bp.fc2 redhat-java-rpm-scripts-1.0.3-2 perl-Math-Spline-0.01-1.1.fc2.rf ucsc-blat-456-1.3.bp.fc2 gcc-objc-3.3.3-7 perl-XML-XPathEngine-0.05-1.fc2.rf perl-Class-DBI-Pager-0.06-1.5.bp.fc2 openssl-devel-0.9.7a-35 automake14-1.4p6-9 libart_lgpl-2.3.16-2.1 perl-PlRPC-0.2017-1.1.fc2.dag gcc-c++-3.3.3-7 genome-Sce-ePCR-S228C-1.6.bp.fc2 expat-1.95.7-1.1 lftp-3.5.4-1.fc2.rf ImageMagick-5.5.7.15-1.3 libtool-1.5.6-1 ucsc-456-1.3.bp.fc2 openldap-devel-2.1.29-1 perl-Net-Daemon-0.39-1.fc2.rf psutils-1.17-22 javamail-20031006-4 faac-devel-1.25-2.fc2.rf perl-URI-1.30-1 perl-HTML-Tagset-3.03-29 tcl-8.4.5-7 tetex-fonts-2.0.2-13 perl-XML-Twig-3.13-5 perl-libwww-perl-5.79-1 ant-core-1.5.2-26 genome-Hsa-nib-17-1.1.bp.fc2 logwatch-5.2.2-0.1.1.fc2.dag faad2-devel-2.5-1.fc2.rf atk-1.6.0-1 ImageMagick-perl-5.5.7.15-1.3 libtiff-3.5.7-16.1 genome-Sce-annotation-gene-S228C-1.6.bp.fc2 perl-IO-String-1.08-1.1.fc2.rf libf2c-3.3.3-7 perl-XML-Writer-0.510-1.1.fc2.dag xerces-j-2.2.1-16 audiofile-0.2.5-1.1 jakarta-regexp-1.2-15 libtermcap-devel-2.0.8-38 perl-MIME-Lite-3.01-2.2.fc2.rf e2fsprogs-devel-1.35-7.1 perl-Class-Base-0.03-1.2.bp.fc2 VFlib2-2.25.6-21 apr-util-devel-0.9.4-14.2 gcc-g77-3.3.3-7 gcc34-java-3.4.0-1 perl-Error-0.15-2.1.fc2.rf zlib-devel-1.2.1.1-2.1 pkgconfig-0.15.0-1.1 blas-3.0-24.1 libmp4v2-1.5.0.1-3.fc2.rf libobjc-3.3.3-7 pcre-devel-4.5-2 glibc-kernheaders-2.4-8.44 divx4linux-5.0.5-0.1.fc2.dag autoconf-2.59-3 qt-devel-3.3.2-2 genome-Hsa-blast-17-1.1.bp.fc2 glibc-headers-2.3.3-27.1 glibc-devel-2.3.3-27.1 gd-2.0.28-1.2.bp.fc2 libjpeg-devel-6b-31.1 gtk2-2.4.0-1 mtr-0.71-1.fc2.rf cpp-3.3.3-7 gettext-0.14.1-2.1 fontconfig-2.2.1-10 gdbm-devel-1.8.0-22.1 libgcj34-3.4.0-1 perl-XML-LibXML-Common-0.13-5 perl-Class-Data-Inheritable-0.06-1.fc2.rf netpbm-10.19-7 bcel-5.0-13 perl-XML-Simple-2.12-1.1.fc2.dag affyfusion-2-1.3.bp.fc2 alsa-lib-1.0.3a-2 jaf-20030319-4 perl-UNIVERSAL-moniker-0.08-1.1.bp.fc2 perl-DBD-MySQL-2.9003-4 ghostscript-fonts-5.50-11 perl-String-CRC32-1.4-1.fc2.rf php-mysql-4.3.4-11 php-xmlrpc-4.3.4-11 libgcj34-devel-3.4.0-1 faad2-2.5-1.fc2.rf perl-Win32-ODBC-1.0-1.2.bp.fc2 gd-devel-2.0.28-1.2.bp.fc2 perl-bioperl-1.5-1.9.bp.fc2 netpbm-progs-10.19-7 compat-libstdc++-7.3-2.96.126 perl-SOAP-Lite-0.69-1.fc2.rf chkfontpath-1.10.0-1 gnuplot-3.7.3-5 perl-Class-DBI-Pg-0.08-1.7.bp.fc2 perl-XML-SAX-0.13-1.1.fc2.rf cyrus-sasl-devel-2.1.18-2.2 audiofile-devel-0.2.5-1.1 rrdtool-1.2.15-1.fc2.rf xerces-c-2.7.0-1.1.fc2.rf genome-Sce-blast-S228C-1.6.bp.fc2 xorg-x11-devel-6.7.0-2 libmng-1.0.4-5.1 krb5-devel-1.3.3-1 perl-Data-Page-2.00-1.1.bp.fc2 rsync-2.6.9-1.fc2.rf tetex-latex-2.0.2-13 xorg-x11-libs-6.7.0-2 junit-3.8.1-4 freetype-devel-2.1.7-4 gd-progs-2.0.28-1.2.bp.fc2 cyrus-sasl-md5-2.1.18-2.2 urw-fonts-2.1-7 mysql-server-3.23.58-9 postgresql-libs-7.4.2-1 perl-FreezeThaw-0.43-1.1.fc2.rf gpg-pubkey-6b8d79e6-3f49313d freetype-2.1.7-4 flex-2.5.4a-31.1 perl-GSSAPI-0.23-1.fc2.rf ghostscript-7.07-25 cyrus-sasl-plain-2.1.18-2.2 perl-Class-Trigger-0.10-1.1.fc2.rf xvidcore-1.1.2-1.fc2.rf genome-Sce-S228C-1.6.bp.fc2 mysql-3.23.58-9 swig-1.3.19-6.1 perl-XML-LibXML-1.58-1.1.fc2.rf cyrus-sasl-2.1.18-2.2 binutils-2.15.90.0.3-5 perl-XML-SAX-Writer-0.50-1.fc2.rf dialog-0.9b-20031207.2 commons-logging-1.0.2-15 gcc34-3.4.0-1 perl-SVG-2.33-1.1.fc2.rf xerces-c-devel-2.7.0-1.1.fc2.rf mod_perl-2.0.1-1.3.bp.fc2 libvorbis-1.0.1-2.1 apr-util-0.9.4-14.2 httpd-2.0.51-2.9 libmng-devel-1.0.4-5.1 ucsc-cgi-456-1.3.bp.fc2 automake-1.8.3-1 libexif-0.5.12-2.1 perl-Text-Shellwords-1.08-1.1.fc2.rf xvidcore-devel-1.1.2-1.fc2.rf tcl-devel-8.4.5-7 php-domxml-4.3.4-11 ncbi-ePCR-2.3.4-1.5.bp.fc2 perl-DBI-1.47-1.8.bp.fc2 libogg-1.1-2.1 rrdtool-devel-1.2.15-1.fc2.rf tetex-dvips-2.0.2-13 libogg-devel-1.1-2.1 perl-Heap-0.71-1.1.fc2.rf libxml2-python-2.6.16-1.1.fc2.rf libvorbis-devel-1.0.1-2.1 gtk+-1.2.10-29.1.1 perl-Class-DBI-ConceptSearch-0.04-1.3.bp.fc2 perl-Graph-0.20105-1.1.fc2.rf libgcj-3.3.3-7 perl-SVG-Graph-0.01-1.3.bp.fc2 fftw3-3.1.1-1.3.bp.fc2 perl-Math-Derivative-0.01-1.1.fc2.rf postgresql-contrib-7.4.2-1
touch SPECS/ExACT.rbuilt
rm SPECS/ExACT.spec